A picture of Ivan Spirandelli

Ivan L. A. Spirandelli

I am a mathematician with a background in computational topology, discrete geometry and combinatorics.

I am currently a postdoctoral researcher at the University of Potsdam and an affiliate researcher at Lawrence Berkeley National Laboratory which I visited as a Fulbright fellow in 2024/2025.

During my PhD I investigated molecular self-assembly in simulations governed by shape-based potentials. At the moment I am further developing this method to simulate how protein-protein interaction inhibitors bind to protein targets.

Publications

Preprints

Software

Visual Impressions

Interface surfaces computed via barycentric subdivision of multicolored tetrahedra. Left: Hepatitis B core protein dimer (PDB: 4BMG). Right: Random colored point cloud. Top row shows the interface surfaces, bottom row shows the corresponding point clouds. Colors on the interface indicate proximity to the input points. Use the sliders to step through the interface filtration.

Software: delaunay-interfaces

*You can rotate, zoom, and pan the structures.